heatherjzhou / PCAForQTLLinks
PCA for hidden variable inference in QTL mapping: an R package and tutorial
☆17Updated 2 years ago
Alternatives and similar repositories for PCAForQTL
Users that are interested in PCAForQTL are comparing it to the libraries listed below
Sorting:
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 9 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆41Updated last year
- ☆27Updated 3 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆30Updated 8 months ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- ☆10Updated last year
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- ☆62Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- Pan-transcriptomic phenotyping☆18Updated last month
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- Improving gene isoform quantification with miniQuant☆26Updated last month
- Cross-population fine-mapping☆38Updated 8 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 8 months ago
- ☆36Updated 6 years ago
- ☆23Updated last month
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆20Updated 5 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆84Updated last year
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆46Updated last year
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- ☆21Updated 4 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- A Fine-Mapping pipeline☆21Updated 5 years ago
- ☆23Updated 8 months ago
- ☆23Updated 4 years ago