Alternatives and similar repositories for hudson

Users that are interested in hudson are comparing it to the libraries listed below

• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆40Updated 2 years ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆44Updated 3 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆49Updated 3 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆55Updated 3 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆44Updated 6 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆53Updated 4 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆73Updated this week
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆40Updated 4 years ago
• cuelee / pleio
  ☆19Updated last month
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆49Updated 5 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 11 months ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated last month
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 6 months ago
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 4 years ago