Alternatives and similar repositories for PrediXcan

Users that are interested in PrediXcan are comparing it to the libraries listed below

• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆168Updated last month
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆78Updated 2 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated last month
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆63Updated last week
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated 2 weeks ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated this week
• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆67Updated 4 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated 3 weeks ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆66Updated 8 months ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆147Updated last year
• FinucaneLab / pops
  ☆79Updated 3 years ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated 3 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆180Updated 10 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆53Updated 4 years ago