hakyimlab / PrediXcan

Related projects ⓘ

Alternatives and complementary repositories for PrediXcan

• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆146Updated last week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆47Updated last month
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆69Updated 6 months ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆28Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆40Updated 3 years ago
• bvilhjal / ldpred
  ☆96Updated 2 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆75Updated 2 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆73Updated 11 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆93Updated 3 months ago
• weizhouUMICH / SAIGE
  ☆191Updated 2 years ago
• PMBio / peer
  A factor analysis package
  ☆95Updated 12 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆40Updated 2 years ago
• FinucaneLab / pops
  ☆64Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆42Updated 5 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆60Updated 3 years ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆160Updated 3 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆150Updated this week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆61Updated this week
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆75Updated 3 weeks ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆185Updated 3 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆70Updated last year
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆55Updated last month
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated 10 months ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆91Updated last week
• josefin-werme / LAVA
  ☆53Updated 4 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆68Updated 5 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆96Updated 6 months ago
• gamazonlab / MR-JTI
  ☆52Updated last month
• limix / limix
  Linear mixed model for genomic analyses.
  ☆103Updated 3 years ago