Alternatives and similar repositories for mashr:

Users that are interested in mashr are comparing it to the libraries listed below

• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆61Updated last month
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆21Updated 5 years ago
• hhhh5 / ewastools
  A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)
  ☆25Updated last year
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆52Updated 4 years ago
• willtownes / glmpca
  ☆94Updated 10 months ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆72Updated 4 years ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated last month
• CBIIT / LDlinkR
  LDlinkR
  ☆58Updated 10 months ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆95Updated last year
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆72Updated this week
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆44Updated 3 months ago
• OchoaLab / genio
  Statistical GENetics Input/Output Functions
  ☆17Updated last week
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 2 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆38Updated last year
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 9 months ago
• yaowuliu / ACAT
  ☆32Updated 3 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• Shians / Glimma
  Glimma R package
  ☆50Updated 5 months ago
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆57Updated 3 years ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated last week
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆55Updated 4 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated last week
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 2 months ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆36Updated last year
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆58Updated last month
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆34Updated 2 weeks ago
• stephaniehicks / qsmooth
  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…
  ☆50Updated 2 years ago