Calculates allelic Fold Change (aFC) using standard input files for fastQTL.
☆26Jun 30, 2022Updated 3 years ago
Alternatives and similar repositories for aFC
Users that are interested in aFC are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Jan 29, 2026Updated last month
- Framework for efficient high-dimensional association analyses.☆18Feb 11, 2026Updated last month
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Oct 24, 2019Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Dec 13, 2021Updated 4 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆19Sep 13, 2018Updated 7 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 2 months ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- ☆12Apr 14, 2021Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Feb 19, 2026Updated last month
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Apr 8, 2023Updated 2 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆14Mar 15, 2023Updated 3 years ago
- Committee Meeting Reports - LaTeX☆11Jun 11, 2018Updated 7 years ago
- A factor analysis package☆106May 8, 2012Updated 13 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- ☆18Feb 25, 2022Updated 4 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Nov 22, 2022Updated 3 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 8 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆47Dec 16, 2024Updated last year
- Kosmos technical report figures, validation code, and reproducible analyses☆29Nov 4, 2025Updated 4 months ago
- An R package for multivariate adaptive shrinkage.☆94Nov 7, 2024Updated last year
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- Signed LD profile regression code☆19Aug 1, 2025Updated 7 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 4 months ago