andreyshabalin / MatrixEQTLLinks
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
☆84Updated last year
Alternatives and similar repositories for MatrixEQTL
Users that are interested in MatrixEQTL are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆67Updated 10 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆51Updated last month
- Colocalization analysis of genetic association signals☆52Updated 2 months ago
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ☆62Updated 3 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 2 months ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- ☆26Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆34Updated 3 years ago
- causal TWAS (cTWAS)☆45Updated last week
- methods for functional summary-based imputation☆87Updated 3 years ago
- Software for estimating correlation of trait effect sizes across populations☆47Updated 2 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 4 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆46Updated 5 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Tutorial Website☆59Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Sequence kernel association test (SKAT)☆51Updated 3 weeks ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆52Updated 3 months ago
- ☆48Updated 3 months ago
- Development for SAIGE and SAIGE-GENE(+)☆81Updated last week