andreyshabalin / MatrixEQTLView external linksLinks
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
☆90Sep 26, 2023Updated 2 years ago
Alternatives and similar repositories for MatrixEQTL
Users that are interested in MatrixEQTL are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆71Mar 19, 2023Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆87May 13, 2022Updated 3 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Apr 16, 2018Updated 7 years ago
- Ultrafast GPU-enabled QTL mapper☆203Jun 29, 2025Updated 7 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated this week
- ☆18Oct 4, 2023Updated 2 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A factor analysis package☆106May 8, 2012Updated 13 years ago
- causal TWAS (cTWAS)☆47Jan 20, 2026Updated 3 weeks ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆20Jan 25, 2023Updated 3 years ago
- Colocalization analysis of genetic association signals☆53Jun 13, 2025Updated 8 months ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Apr 8, 2024Updated last year
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 2 years ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆119Nov 24, 2022Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆31Oct 14, 2024Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆53Mar 6, 2025Updated 11 months ago
- LDlinkR☆63Apr 17, 2024Updated last year
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆16Oct 7, 2025Updated 4 months ago
- ☆14Jun 24, 2024Updated last year
- MetaXcan software and manuscript☆186Jul 4, 2025Updated 7 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Scripts for implementing the Tractor pipeline☆53Sep 4, 2025Updated 5 months ago
- LD Score Regression (LDSC)☆762Jan 16, 2026Updated 3 weeks ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- ☆18Feb 15, 2024Updated last year
- ☆20Feb 1, 2026Updated last week
- ☆40Jan 13, 2026Updated last month
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- GTEx & TOPMed data production and analysis pipelines☆394Sep 14, 2025Updated 4 months ago
- Repo for the R package coloc☆188Dec 4, 2025Updated 2 months ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 7 months ago
- ☆10Sep 4, 2024Updated last year
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 6 months ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 3 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆179Jan 22, 2026Updated 3 weeks ago
- tomato graph pangenome☆87Dec 13, 2022Updated 3 years ago