andreyshabalin / MatrixEQTLLinks
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
☆80Updated last year
Alternatives and similar repositories for MatrixEQTL
Users that are interested in MatrixEQTL are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆66Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 2 months ago
- Colocalization analysis of genetic association signals☆53Updated last week
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Functional genomics and genome-wide association studies☆67Updated 6 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- ☆48Updated last month
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Sequence kernel association test (SKAT)☆50Updated 4 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆45Updated this week
- ☆26Updated 4 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆66Updated 8 months ago
- Fast, integrative fine mapping with functional data☆58Updated 5 years ago
- A factor analysis package☆100Updated 13 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- methods for functional summary-based imputation☆85Updated 3 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆30Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Quality control steps for GWAS☆23Updated last year
- ☆35Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 3 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆45Updated 3 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- ☆60Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last week
- ☆23Updated 3 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago