andreyshabalin / MatrixEQTL
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
☆61Updated last year
Related projects ⓘ
Alternatives and complementary repositories for MatrixEQTL
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Colocalization analysis of genetic association signals☆47Updated this week
- ☆42Updated last week
- QTL Discovery using Annotations☆23Updated last year
- Functional genomics and genome-wide association studies☆64Updated 6 years ago
- Sequence kernel association test (SKAT)☆42Updated 11 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 3 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated last week
- ☆32Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Fast, integrative fine mapping with functional data☆55Updated 5 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 3 years ago
- methods for functional summary-based imputation☆75Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- Statistical tools for Quantitative Genetic Analyses☆34Updated this week
- Harmonise GWAS summary statistics against a reference VCF☆40Updated 3 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆41Updated last week
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆48Updated 10 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 3 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆60Updated 3 weeks ago
- Easily download publicly available GWAS summary statistics.☆72Updated 11 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- ☆64Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated 3 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 9 months ago
- package for the causal TWAS project☆38Updated last week
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆23Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆30Updated 6 years ago