☆47Aug 17, 2026Updated last month
Alternatives and similar repositories for SAIGEQTL
Users that are interested in SAIGEQTL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 8 months ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- ☆23Jun 30, 2026Updated 3 months ago
- GWAS genetics Fine-mapping method☆28Jun 11, 2026Updated 4 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆25Jul 6, 2023Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 6 years ago
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆28Updated this week
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 5 months ago
- ☆13Dec 14, 2023Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆64Sep 26, 2026Updated 2 weeks ago
- ☆22Aug 2, 2025Updated last year
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆23Apr 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆24Apr 16, 2018Updated 8 years ago
- Ultrafast GPU-enabled QTL mapper☆217Jun 29, 2025Updated last year
- Enhanced version of the FastQTL QTL mapper☆73Mar 19, 2023Updated 3 years ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Updated this week
- ☆16Apr 8, 2026Updated 6 months ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆19Oct 8, 2026Updated last week
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆43Apr 26, 2024Updated 2 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated 11 months ago
- A list of awesome tools for complex trait genetics.☆89Jan 28, 2025Updated last year
- MR-link-2: pleiotropy robust cis MR☆23Jun 30, 2026Updated 3 months ago
- Create Regional Association Plots☆14May 27, 2026Updated 4 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆37Sep 26, 2024Updated 2 years ago
- ☆40Jan 20, 2021Updated 5 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆126May 26, 2026Updated 4 months ago
- R package for "sum of single effects" regression.☆269Sep 27, 2026Updated 2 weeks ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated 2 years ago
- Committee Meeting Reports - LaTeX☆11Jun 11, 2018Updated 8 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆87Jun 4, 2026Updated 4 months ago