GTEx & TOPMed data production and analysis pipelines
☆404Sep 14, 2025Updated 7 months ago
Alternatives and similar repositories for gtex-pipeline
Users that are interested in gtex-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆48Dec 16, 2024Updated last year
- Collection of analysis tools for quantitative trait loci☆65Apr 13, 2026Updated 2 weeks ago
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- Ultrafast GPU-enabled QTL mapper☆207Jun 29, 2025Updated 10 months ago
- GTEx analysis scripts☆20Mar 14, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆178Nov 2, 2024Updated last year
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆180Mar 11, 2026Updated last month
- ☆39Apr 25, 2023Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- A factor analysis package☆106May 8, 2012Updated 13 years ago
- Mediated Expression Score Regression (MESC)☆28Nov 4, 2025Updated 5 months ago
- Colocalization analysis of genetic association signals☆57Jun 13, 2025Updated 10 months ago
- Repo for the R package coloc☆193Dec 4, 2025Updated 4 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- LD Score Regression (LDSC)☆778Jan 16, 2026Updated 3 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆94Sep 26, 2023Updated 2 years ago
- ☆24Aug 6, 2021Updated 4 years ago
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 7 months ago
- MetaXcan software and manuscript☆193Jul 4, 2025Updated 9 months ago
- phasing and Allele Specific Expression from RNA-seq☆120Mar 21, 2026Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Feb 11, 2026Updated 2 months ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Nov 13, 2017Updated 8 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Jun 19, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Sep 23, 2022Updated 3 years ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- ☆11May 10, 2025Updated 11 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆48Updated this week
- An R package for multivariate adaptive shrinkage.☆95Nov 7, 2024Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆233Jun 1, 2024Updated last year
- GWAS Pipeline for H3Africa☆115Mar 12, 2026Updated last month
- A tool to build a website to browse hundreds or thousands of GWAS.☆197Apr 22, 2026Updated last week
- ☆58Apr 23, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Easily download publicly available GWAS summary statistics.☆79Dec 3, 2023Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Mar 24, 2026Updated last month
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆137Aug 21, 2024Updated last year
- software package for integrative genetic association analysis☆36Jul 8, 2023Updated 2 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 6 years ago
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- PrediXcan Project☆118Oct 17, 2022Updated 3 years ago