Alternatives and similar repositories for MetaXcan:

Users that are interested in MetaXcan are comparing it to the libraries listed below

• hakyimlab / PrediXcan
  PrediXcan Project
  ☆109Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆102Updated 2 months ago
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆160Updated 3 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆79Updated 2 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆75Updated last year
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆76Updated 6 months ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated 2 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆78Updated 3 months ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆53Updated last year
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆63Updated 4 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 5 months ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆79Updated last week
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆189Updated this week
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆182Updated last year
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆191Updated 6 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆168Updated 7 months ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆58Updated 2 months ago
• hbctraining / DGE_workshop_salmon
  ☆71Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 9 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆70Updated this week
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆48Updated 5 years ago
• FinucaneLab / pops
  ☆73Updated 2 years ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆111Updated 2 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆172Updated 2 months ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆55Updated 2 weeks ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆169Updated last month
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆132Updated 2 years ago