hakyimlab / MetaXcan
MetaXcan software and manuscript
☆146Updated last week
Related projects ⓘ
Alternatives and complementary repositories for MetaXcan
- PrediXcan Project☆107Updated 2 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- Cross-population polygenic prediction☆69Updated 6 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆160Updated this week
- Repo for the R package coloc☆150Updated this week
- Easily download publicly available GWAS summary statistics.☆73Updated 11 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆75Updated 3 weeks ago
- methods for functional summary-based imputation☆75Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆93Updated 3 months ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆60Updated 3 years ago
- ☆191Updated 2 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆185Updated 3 months ago
- ☆64Updated 2 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆61Updated this week
- Harmonise GWAS summary statistics against a reference VCF☆40Updated 3 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆171Updated 5 months ago
- Ultrafast GPU-enabled QTL mapper☆162Updated last week
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆70Updated 3 months ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆160Updated 3 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 3 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆208Updated 5 months ago
- ☆96Updated 2 years ago
- Find causal cell-types underlying complex trait genetics☆72Updated last month
- Linear mixed model for genomic analyses.☆103Updated 3 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆142Updated 4 years ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆171Updated last year
- R package for quality control of plink genetic datasets☆55Updated last month
- High-definition likelihood inference of genetic correlations (HDL)☆96Updated 6 months ago
- A factor analysis package☆95Updated 12 years ago
- ☆140Updated 6 years ago