hruffieux / locus
locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression
☆10Updated last year
Alternatives and similar repositories for locus:
Users that are interested in locus are comparing it to the libraries listed below
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated 3 weeks ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- R package for Empirical Bayes Factor Analysis.☆49Updated 2 months ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆9Updated last year
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- logistic factor analysis☆16Updated 11 months ago
- A matrix-like wrapper around PLINK .bed files☆18Updated 5 months ago
- Performance oriented statistical metrics and utility functions in R☆29Updated 4 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 3 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆16Updated 5 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Updated 8 years ago
- Implementation of the matrixStats API for sparse matrices☆54Updated 8 months ago
- Mixed models @lme4 + custom covariances + parameter constraints☆52Updated 4 years ago
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆28Updated 3 years ago
- An R package for multivariate adaptive shrinkage.☆91Updated 3 months ago
- Quantitative Trait Cluster Association Test in R☆25Updated 3 years ago
- Foundation of integer range manipulation in Bioconductor☆22Updated this week
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- A faster and angrier package for EBMF.☆11Updated 2 weeks ago
- ☆10Updated 3 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- ☆25Updated 5 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated 11 months ago
- Package to wrangle and visualize genomic data in R☆26Updated 4 months ago
- Statistical GENetics Input/Output Functions☆17Updated last week
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated 2 weeks ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago