hruffieux / locus
locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression
☆10Updated last year
Alternatives and similar repositories for locus:
Users that are interested in locus are comparing it to the libraries listed below
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated 3 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated last year
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆9Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆16Updated 5 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Updated 8 years ago
- An R package for multivariate adaptive shrinkage.☆90Updated 5 months ago
- Mixed models @lme4 + custom covariances + parameter constraints☆53Updated 4 years ago
- A matrix-like wrapper around PLINK .bed files☆18Updated 7 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 6 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- R package for Empirical Bayes Factor Analysis.☆50Updated 4 months ago
- ☆10Updated 4 years ago
- GridLMM package☆39Updated last week
- ☆25Updated 5 years ago
- Foundation of integer range manipulation in Bioconductor☆22Updated this week
- Simulate GWAS data from an arbitrary DAG☆11Updated last month
- Performance oriented statistical metrics and utility functions in R☆30Updated 4 years ago
- Statistical GENetics Input/Output Functions☆18Updated 2 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 4 years ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Updated this week
- Implementation of the matrixStats API for sparse matrices☆54Updated 2 weeks ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- A faster and angrier package for EBMF.☆11Updated 2 months ago
- Implementation of LTFH++☆10Updated 10 months ago
- Package to wrangle and visualize genomic data in R☆26Updated 6 months ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated 2 weeks ago
- logistic factor analysis☆16Updated 2 weeks ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago