Alternatives and similar repositories for coloc:

Users that are interested in coloc are comparing it to the libraries listed below

• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated last month
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆109Updated 2 years ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆125Updated 2 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆101Updated this week
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆87Updated last year
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆78Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆97Updated last month
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆78Updated 2 years ago
• josefin-werme / LAVA
  ☆56Updated 6 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆50Updated 9 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆87Updated 4 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 3 months ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆77Updated 3 months ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆177Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆46Updated 3 years ago
• cran / MendelianRandomization
   This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package
  ☆44Updated 9 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆73Updated 8 months ago
• jean997 / cause
  R package for CAUSE
  ☆54Updated last year
• clagiamba / moloc
  ☆34Updated 3 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆74Updated last year
• gamazonlab / MR-JTI
  ☆54Updated this week
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆49Updated 11 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆76Updated last month
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆69Updated last week
• mglev1n / ldscr
  LD Score Regression in R
  ☆39Updated last year
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆31Updated 2 years ago