Collection of analysis tools for quantitative trait loci
☆65Jun 3, 2026Updated 2 months ago
Alternatives and similar repositories for pyqtl
Users that are interested in pyqtl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultrafast GPU-enabled QTL mapper☆217Jun 29, 2025Updated last year
- GTEx & TOPMed data production and analysis pipelines☆410Sep 14, 2025Updated 11 months ago
- An R package for creating mirrored Manhattan plots☆19Sep 30, 2022Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Apr 25, 2026Updated 3 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆50Dec 16, 2024Updated last year
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated last week
- A complete tool set for molecular QTL discovery and analysis☆65Apr 16, 2024Updated 2 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- Flexible, scalable, QTL analyses using generalized linear models implemented in JAX☆20Jun 24, 2026Updated last month
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 4 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 6 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆100Sep 26, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆41Oct 13, 2021Updated 4 years ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆63Mar 24, 2026Updated 4 months ago
- A tool to plot significant regions of GWAS☆30Jan 27, 2023Updated 3 years ago
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- Python Primer Design Library☆15Mar 27, 2026Updated 4 months ago
- ☆13Jan 23, 2025Updated last year
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- An R package for creating ggplot2 based miami plots.☆20Mar 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- A factor analysis package☆109May 8, 2012Updated 14 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jul 23, 2026Updated 3 weeks ago
- ☆12Jan 31, 2023Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Aug 7, 2026Updated last week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆86Updated this week
- Scripts for implementing the Tractor pipeline☆55Jul 29, 2026Updated 2 weeks ago
- ☆23Sep 23, 2022Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated 2 months ago
- Gene-level general linear mixed model☆25Oct 1, 2025Updated 10 months ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 6 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 5 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Aug 10, 2026Updated last week
- LD Score Regression (LDSC)☆797Jan 16, 2026Updated 7 months ago