broadinstitute / pyqtlLinks
Collection of analysis tools for quantitative trait loci
☆61Updated 2 weeks ago
Alternatives and similar repositories for pyqtl
Users that are interested in pyqtl are comparing it to the libraries listed below
Sorting:
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated 2 months ago
- Tools for working with BUS files☆102Updated 6 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- ☆82Updated 8 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- ☆100Updated 3 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆47Updated last week
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆122Updated last month
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- ☆49Updated 2 years ago
- ☆120Updated 2 years ago
- ☆53Updated 3 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago