Alternatives and similar repositories for pyqtl:

Users that are interested in pyqtl are comparing it to the libraries listed below

• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆64Updated 2 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆47Updated 3 weeks ago
• FinucaneLab / pops
  ☆78Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 9 months ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆36Updated 9 months ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆74Updated 3 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆44Updated this week
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆55Updated 2 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆53Updated last year
• mourisl / T1K
  T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
  ☆71Updated last week
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆58Updated last year
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated this week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated last month
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 2 months ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆65Updated 3 years ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆65Updated last week
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆80Updated 5 months ago
• qtltools / qtltools
  A complete tool set for molecular QTL discovery and analysis
  ☆53Updated last year
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆73Updated 2 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆67Updated last month
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆112Updated 3 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• nloyfer / UXM_deconv
  ☆43Updated 2 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆52Updated 3 weeks ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆68Updated last year
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆69Updated last week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆123Updated 2 years ago