broadinstitute / pyqtlLinks
Collection of analysis tools for quantitative trait loci
☆55Updated 2 months ago
Alternatives and similar repositories for pyqtl
Users that are interested in pyqtl are comparing it to the libraries listed below
Sorting:
- ☆73Updated last month
- Tutorial Website☆59Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated last month
- A list of alternative splicing analysis resources☆43Updated 2 months ago
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- ☆26Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆66Updated 3 weeks ago
- SNV calling from single cell sequencing☆100Updated 6 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆81Updated last week
- ☆43Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Genomic coordinates of problematic genomic regions as GRanges☆39Updated 5 months ago
- Links to ATAC-seq analysis tools☆66Updated 3 years ago
- ☆79Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- A complete tool set for molecular QTL discovery and analysis☆55Updated last year
- ☆69Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 7 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week