broadinstitute / pyqtlLinks
Collection of analysis tools for quantitative trait loci
☆57Updated last month
Alternatives and similar repositories for pyqtl
Users that are interested in pyqtl are comparing it to the libraries listed below
Sorting:
- mgatk: mitochondrial genome analysis toolkit☆108Updated 6 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Tools for working with BUS files☆101Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆94Updated this week
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆110Updated 8 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- ☆75Updated 3 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- ☆117Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆50Updated 3 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- ☆88Updated last month
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 3 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year