PMBio / peerLinks
A factor analysis package
☆101Updated 13 years ago
Alternatives and similar repositories for peer
Users that are interested in peer are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆53Updated last week
- DNA methylation analysis notes from Ming Tang☆88Updated 6 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 8 months ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 3 months ago
- A complete tool set for molecular QTL discovery and analysis☆57Updated last year
- A tool for bigWig files.☆119Updated 7 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆73Updated 3 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Visualizing transcript structure and annotation using ggplot2☆160Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆88Updated 3 months ago