PMBio / peer
A factor analysis package
☆99Updated 12 years ago
Alternatives and similar repositories for peer:
Users that are interested in peer are comparing it to the libraries listed below
- methods for functional summary-based imputation☆79Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆62Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated 3 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 4 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆102Updated 3 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆43Updated this week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 2 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 2 months ago
- Easily download publicly available GWAS summary statistics.☆75Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆73Updated last year
- ☆83Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- ☆116Updated last year
- Functional genomics and genome-wide association studies☆66Updated 6 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago