broadinstitute / gtex-v8
Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
☆40Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for gtex-v8
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆48Updated 10 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- ☆42Updated last week
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆60Updated 3 weeks ago
- Colocalization analysis of genetic association signals☆47Updated this week
- ☆52Updated 2 years ago
- A tool to plot significant regions of GWAS☆28Updated last year
- Burden testing against public controls☆50Updated 8 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated 3 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 3 months ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 7 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆61Updated last year
- Sequence kernel association test (SKAT)☆42Updated 11 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- software package for integrative genetic association analysis☆31Updated last year
- An accurate and efficient HLA imputation method.☆26Updated last year
- ☆24Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Cross-population fine-mapping☆26Updated last week
- ☆40Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Fast, integrative fine mapping with functional data☆55Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆26Updated 3 months ago
- ☆16Updated 3 years ago