Alternatives and similar repositories for eQTpLot:

Users that are interested in eQTpLot are comparing it to the libraries listed below

• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆78Updated 2 years ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆110Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆30Updated last year
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 4 months ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• cumc / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆43Updated this week
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 2 months ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last month
• chr1swallace / coloc
  Repo for the R package coloc
  ☆160Updated 3 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆75Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆102Updated 2 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆55Updated 4 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆101Updated last week
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆46Updated this week
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆131Updated 2 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated 2 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated last week
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆62Updated last week
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆89Updated 5 months ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆79Updated 4 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆91Updated 4 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆18Updated last year
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆58Updated last month
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆58Updated 10 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 3 months ago