Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
☆57Mar 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for qtlmap
Users that are interested in qtlmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated 11 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆94Sep 26, 2023Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 11 months ago
- Ultrafast GPU-enabled QTL mapper☆207Jun 29, 2025Updated 9 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆88May 13, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆43Mar 12, 2026Updated last month
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 7 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Apr 3, 2025Updated last year
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆48Apr 9, 2026Updated last week
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 3 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Statistical fine-mapping pipeline in FinnGen☆32Oct 3, 2025Updated 6 months ago
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆74Feb 4, 2021Updated 5 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 6 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Jun 17, 2025Updated 9 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆81Oct 7, 2025Updated 6 months ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated last month
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆46Mar 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- ☆24Jul 29, 2025Updated 8 months ago
- Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu☆18Mar 16, 2026Updated last month
- Create Regional Association Plots☆13Sep 7, 2025Updated 7 months ago
- Collection of analysis tools for quantitative trait loci☆62Apr 9, 2026Updated last week
- Calculates allelic Fold Change (aFC) using standard input files for fastQTL.☆26Jun 30, 2022Updated 3 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆18Jan 29, 2026Updated 2 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆23Apr 16, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 7 years ago
- A complete tool set for molecular QTL discovery and analysis☆64Apr 16, 2024Updated 2 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 6 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- R package for "sum of single effects" regression.☆252Updated this week