eQTL-Catalogue / qtlmapLinks
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
☆56Updated last month
Alternatives and similar repositories for qtlmap
Users that are interested in qtlmap are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆72Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 6 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last week
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆67Updated 7 months ago
- ☆46Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Publication quality NGS track plotting☆114Updated 3 weeks ago
- ☆78Updated 6 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- Tutorial Website☆60Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Allele-specific alignment sorting☆59Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 9 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago