Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
☆64Sep 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for qtlmap
Users that are interested in qtlmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆102Sep 26, 2023Updated 3 years ago
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated last year
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast GPU-enabled QTL mapper☆217Jun 29, 2025Updated last year
- Statistical fine-mapping pipeline in FinnGen☆35Aug 14, 2026Updated 2 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆90May 13, 2022Updated 4 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆56Updated this week
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- Enhanced version of the FastQTL QTL mapper☆73Mar 19, 2023Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- ☆47Aug 17, 2026Updated last month
- ☆10Jan 20, 2023Updated 3 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆75Feb 4, 2021Updated 5 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆36Jun 17, 2025Updated last year
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆84Oct 7, 2025Updated last year
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 6 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- ☆25Jul 29, 2025Updated last year
- Open Targets python framework for post-GWAS analysis☆59Updated this week
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆18Jan 29, 2026Updated 8 months ago
- Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu☆19Mar 16, 2026Updated 6 months ago
- Calculates allelic Fold Change (aFC) using standard input files for fastQTL.☆28Jun 30, 2022Updated 4 years ago
- Collection of analysis tools for quantitative trait loci☆66Sep 20, 2026Updated 3 weeks ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create Regional Association Plots☆14May 27, 2026Updated 4 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆24Apr 16, 2018Updated 8 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated 2 years ago
- Cross-population polygenic prediction☆113Updated this week
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago