eQTL-Catalogue / qtlmapLinks
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
☆57Updated 3 months ago
Alternatives and similar repositories for qtlmap
Users that are interested in qtlmap are comparing it to the libraries listed below
Sorting:
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆89Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 8 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- A complete tool set for molecular QTL discovery and analysis☆60Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- ☆63Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- RNA editing tests☆17Updated 5 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- ☆72Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Tutorial Website☆61Updated 4 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 11 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆44Updated last year
- A factor analysis package☆104Updated 13 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated 3 weeks ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 3 weeks ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week