theislab / scanpy-in-RLinks
A guide to using the Python scRNA-seq analysis package Scanpy from R
☆15Updated 5 years ago
Alternatives and similar repositories for scanpy-in-R
Users that are interested in scanpy-in-R are comparing it to the libraries listed below
Sorting:
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆55Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ☆42Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- ☆42Updated 2 months ago
- scWGCNA☆61Updated 2 years ago
- ☆35Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆29Updated 2 years ago
- ☆43Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆60Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago