A guide to using the Python scRNA-seq analysis package Scanpy from R
☆15Apr 27, 2020Updated 6 years ago
Alternatives and similar repositories for scanpy-in-R
Users that are interested in scanpy-in-R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Use cases for anndata.☆14Aug 18, 2026Updated last month
- ☆18Jun 13, 2024Updated 2 years ago
- The Terra Data Repository built by the Jade team.☆13Sep 30, 2026Updated last week
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Sep 24, 2026Updated 2 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Sep 28, 2026Updated last week
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 7 months ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- ☆10Dec 14, 2016Updated 9 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 10, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 3 years ago
- ☆15Oct 11, 2019Updated 6 years ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated 2 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 4 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 6 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆14Jun 21, 2022Updated 4 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The book aims to describe programming good practices and introduce common tools used in software development to guarantee reproducibility…☆14Jan 2, 2023Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated 3 weeks ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- AnnData interoperability in R☆199Updated this week
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆68May 17, 2026Updated 4 months ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!☆18Jun 25, 2024Updated 2 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Single-Cell Clustering Assessment Framework☆111Oct 27, 2023Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 5 months ago
- ☆20May 20, 2021Updated 5 years ago