A guide to using the Python scRNA-seq analysis package Scanpy from R
☆15Apr 27, 2020Updated 6 years ago
Alternatives and similar repositories for scanpy-in-R
Users that are interested in scanpy-in-R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Use cases for anndata.☆14Jun 11, 2025Updated 10 months ago
- Single-cell Case Control Analysis☆56Feb 26, 2026Updated 2 months ago
- ☆18Jun 13, 2024Updated last year
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The Terra Data Repository built by the Jade team.☆13Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Apr 22, 2026Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 20, 2026Updated last week
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- ☆10Dec 14, 2016Updated 9 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆224Apr 1, 2026Updated 3 weeks ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Geometry-preserving random sampling☆97Oct 29, 2024Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated last year
- Basics of the OSCA book☆15Sep 29, 2025Updated 7 months ago
- AnnData interoperability in R☆169Updated this week
- ☆14Oct 11, 2019Updated 6 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Apr 8, 2021Updated 5 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- The book aims to describe programming good practices and introduce common tools used in software development to guarantee reproducibility…☆15Jan 2, 2023Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆392Jul 30, 2025Updated 8 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!☆17Jun 25, 2024Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 4 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆29Jan 29, 2026Updated 3 months ago
- ☆67Apr 16, 2026Updated last week
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- MicrOSAtellite Instability Classifier☆15Apr 22, 2026Updated last week
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago