A python tool to do comparative analysis of mulitple single cell datasets.
☆21Oct 25, 2019Updated 6 years ago
Alternatives and similar repositories for scPopCorn
Users that are interested in scPopCorn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- ☆12May 14, 2024Updated 2 years ago
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- ☆23Apr 17, 2020Updated 6 years ago
- An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data☆28Oct 4, 2023Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 3 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- flexible CDR based distance metrics☆72Dec 16, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 10 months ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆13Jun 18, 2018Updated 7 years ago
- repository of scripts for comparative transcriptome analysis☆19Apr 10, 2019Updated 7 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- Geometry-preserving random sampling☆97Oct 29, 2024Updated last year
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- My tidy tuesday kludges☆12Mar 29, 2023Updated 3 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Nov 28, 2018Updated 7 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17May 8, 2026Updated 2 weeks ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Documentation for the ISB-CGC on Read the Docs.☆11Apr 15, 2026Updated last month
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- COSAP: Comparative Sequencing Analysis Platform☆20Dec 10, 2025Updated 5 months ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆22Jun 17, 2024Updated last year
- ☆12May 29, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year