A python tool to do comparative analysis of mulitple single cell datasets.
☆21Oct 25, 2019Updated 6 years ago
Alternatives and similar repositories for scPopCorn
Users that are interested in scPopCorn are comparing it to the libraries listed below
Sorting:
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- ☆20Mar 28, 2017Updated 8 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 8 months ago
- A model context protocol (MCP) server for the EBI Ontology Lookup Service (OLS)☆23Jul 16, 2025Updated 7 months ago
- ☆12May 29, 2024Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Feb 11, 2026Updated 2 weeks ago
- Biological Pathway Visualization☆11Apr 8, 2021Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- ☆13Nov 28, 2018Updated 7 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Updated this week
- ☆14Mar 14, 2024Updated last year
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆35Jul 23, 2025Updated 7 months ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- ☆16Dec 11, 2018Updated 7 years ago
- ☆12May 14, 2024Updated last year
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Updated this week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 3 years ago
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆21Aug 7, 2024Updated last year
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago