ncbi / scPopCornLinks
A python tool to do comparative analysis of mulitple single cell datasets.
☆22Updated 5 years ago
Alternatives and similar repositories for scPopCorn
Users that are interested in scPopCorn are comparing it to the libraries listed below
Sorting:
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆35Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ☆34Updated 6 years ago
- ☆28Updated 6 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Toolkit for single-cell copy number analysis☆24Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆43Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆24Updated 4 months ago
- A single cell sequencing read simulator.☆33Updated 11 months ago
- kallisto index tag extractor☆20Updated 6 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year