hhcho / densvis
Density-preserving data visualization tools den-SNE and densMAP
☆110Updated 3 years ago
Alternatives and similar repositories for densvis:
Users that are interested in densvis are comparing it to the libraries listed below
- The art of using t-SNE for single-cell transcriptomics☆122Updated 3 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆147Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Latent spaces for single cells☆21Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- Archetypal Analysis network (AAnet)☆31Updated last month
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 7 months ago
- Deep learning for single-cell transcript counts☆85Updated 4 years ago
- Conditional out-of-distribution prediction☆56Updated 7 months ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- ☆98Updated last year
- Quantifying experimental perturbations at single cell resolution☆106Updated 5 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆95Updated last year
- ☆63Updated 5 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆52Updated 5 months ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Git Repo for simulating Boolean Models☆33Updated 8 months ago
- ☆33Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- ☆16Updated 3 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated last year
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- ☆65Updated last year
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆98Updated 5 months ago