Alternatives and similar repositories for Kun-peng:

Users that are interested in Kun-peng are comparing it to the libraries listed below

• fanglu0411 / sgs
  SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
  ☆91Updated this week
• CMUSchwartzLab / TUSV-ext
  ☆22Updated last month
• zzdzr / Fun
  Algorithm to identify chromatin fountains
  ☆18Updated 10 months ago
• CMUSchwartzLab / RADs
  ☆11Updated 2 years ago
• CMUSchwartzLab / FISH_deconvolution
  code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
  ☆10Updated 5 years ago
• CMUSchwartzLab / cancer-phylogenetics-prognostic-prediction
  Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
  ☆23Updated 5 years ago
• yifengtao / genome-transformer
  Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
  ☆62Updated 5 years ago
• PENGLU-WashU / IMC_Denoise
  IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
  ☆52Updated 6 months ago
• GuoBioinfoLab / TCellSI
  The First Innovative Tool to Comprehensively Assess T Cell States
  ☆102Updated last month
• NBISweden / GenErode
  GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples …
  ☆25Updated this week
• CMUSchwartzLab / NND
  Neural network deconvolution
  ☆8Updated 4 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆42Updated 10 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆40Updated 2 weeks ago
• tseemann / snasm
  Assembly based core SNP alignments
  ☆7Updated last year
• philarevalo / PopCOGenT
  Microbial Populations as Clusters Of Gene Transfer
  ☆44Updated last year
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆36Updated 10 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆51Updated this week
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated last month
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆102Updated last year
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 2 years ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆75Updated 3 weeks ago
• OLF-Bioinformatics / VariantDetective
  Identify short variants and structural variants from raw sequencing data or genomic sequences
  ☆24Updated 11 months ago
• ziyewang / COMEBin
  ☆46Updated 11 months ago
• ctmrbio / stag-mwc
  StaG Metagenomic Workflow Collaboration
  ☆29Updated 6 months ago