Alternatives and similar repositories for Kun-peng:

Users that are interested in Kun-peng are comparing it to the libraries listed below

• GenerTeam / GENERanno
  GENERanno: A Unified Genomic Foundation Model with Specialization in Gene Annotation
  ☆91Updated 3 weeks ago
• fanglu0411 / sgs
  SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
  ☆97Updated last month
• deepomicslab / SpecImmune
  Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene familie…
  ☆20Updated this week
• CMUSchwartzLab / TUSV-ext
  ☆22Updated 3 months ago
• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆404Updated 3 weeks ago
• zzdzr / Fun
  Algorithm to identify chromatin fountains
  ☆19Updated last year
• ElliotXie / CASSIA
  CASSIA: A multiagent llm based single cell Annottaion framework
  ☆23Updated this week
• CMUSchwartzLab / RADs
  ☆11Updated 3 years ago
• yifengtao / genome-transformer
  Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
  ☆63Updated 5 years ago
• CMUSchwartzLab / cancer-phylogenetics-prognostic-prediction
  Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
  ☆23Updated 5 years ago
• CMUSchwartzLab / FISH_deconvolution
  code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
  ☆10Updated 5 years ago
• CMUSchwartzLab / NND
  Neural network deconvolution
  ☆8Updated 4 years ago
• PENGLU-WashU / IMC_Denoise
  IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
  ☆52Updated 8 months ago
• osmanbeyoglulab / CITRUS
  ☆22Updated 2 years ago
• johon-lituobang / REDS_Mean
  Robust estimations from distribution structures: Mean.
  ☆18Updated last year
• enasequence / webin-cli
  Webin command line submission program.
  ☆34Updated 3 weeks ago
• tsy19900929 / GeneFuse_Plus
  ☆28Updated last year
• nf-core / phageannotator
  Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
  ☆13Updated 2 months ago
• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆17Updated 9 months ago
• bvalot / pyMLST
  whole genome MLST analysis
  ☆41Updated last month
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆42Updated 9 months ago
• a-h-b / binny
  ☆28Updated last year
• MaestSi / MetaBlast
  A Metagenomic pipeline for parallel Blast analysis and report generation.
  ☆9Updated last year
• johon-lituobang / REDS_Invariant_Moments
  Robust estimations from distribution structures: Invariant moments.
  ☆18Updated last year
• kullrich / snpless-nf
  snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.
  ☆14Updated 11 months ago
• GuoBioinfoLab / TCellSI
  The First Innovative Tool to Comprehensively Assess T Cell States
  ☆104Updated last month
• fischuu / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆13Updated 5 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated 2 months ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆39Updated 5 months ago