blekhmanlab / biomehorizonLinks
Plot microbiome time series in parallel
☆26Updated last year
Alternatives and similar repositories for biomehorizon
Users that are interested in biomehorizon are comparing it to the libraries listed below
Sorting:
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆21Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- ☆45Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- ☆29Updated 5 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- ☆25Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ☆22Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- R package for microbial pangenomics☆23Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- ☆17Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Working with the outputs of sourmash in R☆27Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- ☆24Updated 6 years ago
- scripts for microbiome analysis☆11Updated 10 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year