blekhmanlab / biomehorizonView external linksLinks
Plot microbiome time series in parallel
☆27Nov 7, 2023Updated 2 years ago
Alternatives and similar repositories for biomehorizon
Users that are interested in biomehorizon are comparing it to the libraries listed below
Sorting:
- R package for fetching and parsing data of the Human Microbiome Compendium☆16Jan 24, 2025Updated last year
- ☆19Nov 11, 2024Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 5 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 4 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆90Oct 9, 2025Updated 4 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19May 11, 2022Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆33Dec 4, 2025Updated 2 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆26Nov 19, 2025Updated 2 months ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆19May 22, 2020Updated 5 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- ☆11Apr 5, 2021Updated 4 years ago
- ☆10Mar 24, 2025Updated 10 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Sep 3, 2024Updated last year
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- ☆47Mar 13, 2024Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 6 months ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated last month
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- SKATE R Utilities☆10Jun 19, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆26May 21, 2025Updated 8 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Jan 29, 2026Updated 2 weeks ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 3 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Miscellaneous functions for metagenomic analysis.☆53Dec 28, 2025Updated last month
- Network construction, analysis, and comparison for microbial compositional data☆175Dec 18, 2025Updated last month
- ☆32Jan 21, 2026Updated 3 weeks ago
- Compositional Lotka-Volterra☆16May 31, 2024Updated last year
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 4 years ago