Plot microbiome time series in parallel
☆27Nov 7, 2023Updated 2 years ago
Alternatives and similar repositories for biomehorizon
Users that are interested in biomehorizon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17May 6, 2026Updated 5 months ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆95Oct 9, 2025Updated last year
- Nextflow pipeline for the analysis of metagenomic short reads.☆25Sep 24, 2026Updated 2 weeks ago
- ☆10Mar 24, 2025Updated last year
- ☆20Nov 11, 2024Updated last year
- Compositional Lotka-Volterra☆16May 31, 2024Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆33Oct 1, 2026Updated last week
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- Bioinformatics program inStrain☆192Updated this week
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆28Nov 19, 2025Updated 10 months ago
- ☆52May 29, 2026Updated 4 months ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- ☆13Apr 5, 2021Updated 5 years ago
- agent based modelling☆39Aug 28, 2024Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 7 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 10 months ago
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14May 22, 2026Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 9 months ago
- ☆38Jan 21, 2026Updated 8 months ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago