blekhmanlab / biomehorizon

Related projects ⓘ

Alternatives and complementary repositories for biomehorizon

• kevinmcgregor / mdine
  ☆11Updated 3 years ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 2 years ago
• Xiaoyu2425 / mEQO
  ☆15Updated last year
• microbiome / miaSim
  microbiome data simulation package
  ☆18Updated 2 weeks ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 3 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 2 weeks ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆49Updated 4 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated last year
• statdivlab / radEmu
  ☆50Updated 2 weeks ago
• allind / EukDetect
  ☆45Updated 6 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 3 months ago
• eead-csic-compbio / metagenome_Pfam_score
  Protocol for finding informative protein families and then using them to score metagenomic sets.
  ☆9Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• jlw-ecoevo / gRodon
  ☆17Updated last year
• valdeanda / mebs
  Protocol for finding informative protein families and then using them to score omic samples
  ☆17Updated 2 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆31Updated last month
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆26Updated 11 months ago
• lauriebelch / SOCfinder
  ☆14Updated 2 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆57Updated last week
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆20Updated last year
• kelwyres / Bactabolize
  ☆35Updated this week
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆49Updated this week
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 4 months ago
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆29Updated 2 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆29Updated last year
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆34Updated 9 months ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆23Updated last week
• AlexanderLabWHOI / EukHeist
  ☆23Updated last year
• genomicepidemiology / ARGprofiler
  A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
  ☆17Updated last month