GPU-accelerated DNA barcode classification
☆14Jan 2, 2025Updated last year
Alternatives and similar repositories for PROTAX-GPU
Users that are interested in PROTAX-GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package supporting interactive data access on BOLD☆22Updated this week
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆19May 26, 2025Updated last year
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆33May 29, 2024Updated 2 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆33Mar 21, 2026Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Updated this week
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 5 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 4 months ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- ☆17Updated this week
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 10 months ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Sep 6, 2021Updated 4 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research☆39Updated this week
- ☆17Aug 18, 2012Updated 13 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆37Nov 5, 2025Updated 7 months ago
- ☆19Updated this week
- ☆16Feb 5, 2025Updated last year
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated last year
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- R package for ecological niche analysis (subniche on CRAN). Refines OMI analysis for realized niche decomposition using marine and enviro…☆10Apr 1, 2026Updated 2 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 6 months ago
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated last year
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fossil calibrations database☆16Sep 18, 2018Updated 7 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 11 months ago
- Massively parallel phylogenetic placement of genetic sequences☆87Aug 23, 2022Updated 3 years ago
- REference Sequence annotation and CuRatIon Pipeline☆100Jun 3, 2026Updated last week
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 12 years ago
- mPTP - a tool for single-locus species delimitation☆30Mar 14, 2026Updated 3 months ago