uoguelph-mlrg / PROTAX-GPULinks
GPU-accelerated DNA barcode classification
☆11Updated 9 months ago
Alternatives and similar repositories for PROTAX-GPU
Users that are interested in PROTAX-GPU are comparing it to the libraries listed below
Sorting:
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆30Updated last month
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last week
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- creating reference databases for amplicon sequencing☆40Updated last week
- ☆40Updated last year
- functions for analyzing phyloseq data☆28Updated 8 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- microbiome data simulation package☆22Updated last week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- ☆21Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 2 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- Look Up Guild Information for Fungi in R☆22Updated 6 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- ☆29Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 5 months ago
- Snakemake workflow to generate OTU tables from barcoded ONT data☆15Updated 8 months ago
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆18Updated this week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 months ago
- Speedy versions of phyloseq functions☆48Updated last year