Alternatives and similar repositories for PROTAX-GPU

Users that are interested in PROTAX-GPU are comparing it to the libraries listed below

• hariszaf / pema
  PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
  ☆32Updated 3 months ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆17Updated 3 months ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated 2 years ago
• ukaraoz / microtrait
  ☆43Updated last year
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆41Updated last week
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated last year
• adrientaudiere / MiscMetabar
  R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
  ☆19Updated last week
• aomlomics / mitohelper
  Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
  ☆21Updated 2 weeks ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆22Updated 8 months ago
• mahsa-mousavi / eDNAFlow
  ☆21Updated 2 years ago
• Pas-Kapli / mptp
  mPTP - a tool for single-locus species delimitation
  ☆29Updated 2 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 9 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆39Updated 2 years ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 3 months ago
• terrimporter / CO1Classifier
  This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…
  ☆33Updated 2 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated last month
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆31Updated 6 months ago
• microbiome / miaSim
  microbiome data simulation package
  ☆22Updated last month
• MathiasEskildsen / ONT-AmpSeq
  Snakemake workflow to generate OTU tables from barcoded ONT data
  ☆17Updated 10 months ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆23Updated 4 months ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆28Updated 2 years ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆25Updated 2 months ago
• DominikBuchner / BOLDigger
  A python package to query different databases of boldsystems.org
  ☆32Updated last year
• miwipe / ngsLCA
  ☆13Updated 5 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last month
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• boldsystems-central / BOLDconnectR
  R package supporting interactive data access on BOLD
  ☆13Updated last month