blekhmanlab / MicroBioMap
R package for fetching and parsing data of the Human Microbiome Compendium
☆9Updated 2 months ago
Alternatives and similar repositories for MicroBioMap:
Users that are interested in MicroBioMap are comparing it to the libraries listed below
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 5 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆27Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- ☆14Updated 4 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- ☆16Updated this week
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- Qiime2 snakemake pipeline☆17Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- From metagenomes to epitopes and beyond☆11Updated 2 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- ☆18Updated 4 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆29Updated 2 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Updated 3 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago