blekhmanlab / MicroBioMapLinks
R package for fetching and parsing data of the Human Microbiome Compendium
☆16Updated last year
Alternatives and similar repositories for MicroBioMap
Users that are interested in MicroBioMap are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- gutSMASH☆57Updated 4 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- ☆22Updated 2 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- ☆39Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- ☆24Updated 5 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last week
- ☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Qiime2 snakemake pipeline☆20Updated 2 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- ☆15Updated 2 years ago
- ☆32Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Updated 5 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Updated last week
- R package to predict microbial loads☆17Updated 4 months ago