Reference Phylogeny for Bacterial and Archaeal Genomes
☆25Aug 9, 2025Updated 10 months ago
Alternatives and similar repositories for wol
Users that are interested in wol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- MicrobeDirectory 2.0☆22Aug 10, 2020Updated 5 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 4 months ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- ☆42Apr 2, 2024Updated 2 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆17Dec 5, 2017Updated 8 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 7 months ago
- ☆18Jun 1, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Apr 27, 2026Updated last month
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆68Aug 12, 2019Updated 6 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 7 months ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 8 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 6 months ago
- Fast implementation of the Neighbour-Joining method for phylogenetic inference☆20Sep 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆70May 17, 2023Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆54Aug 4, 2024Updated last year
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Feb 6, 2023Updated 3 years ago