StewartLab / Stewart_TEDDY_Microbiome_AnalysisLinks
Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study
☆10Updated 7 years ago
Alternatives and similar repositories for Stewart_TEDDY_Microbiome_Analysis
Users that are interested in Stewart_TEDDY_Microbiome_Analysis are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Microbiome research☆21Updated 3 years ago
- ☆14Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆24Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- ☆12Updated 8 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆35Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 6 months ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- ☆26Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- R package for downstream Microbiome analysis☆31Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 3 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 6 years ago
- ☆18Updated 3 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- Microbiome profiling☆15Updated 2 months ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- ☆15Updated last year
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Updated 5 years ago
- R shiny app for interactive microbiome analysis☆56Updated 8 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago