Alternatives and similar repositories for DAJIN2

Users that are interested in DAJIN2 are comparing it to the libraries listed below

• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 5 years ago
• NCGG-MGC / IMSindel
  IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …
  ☆16Updated 2 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated last month
• lindenb / rbcf
  R Bindings for htslib/bcf
  ☆10Updated 2 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated this week
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• orangeSi / bam2msa
  convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
  ☆13Updated last year
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆25Updated last year
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• tjiangHIT / rMETL
  rMETL - realignment-based Mobile Element insertion detection Tool for Long read
  ☆20Updated last year
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last week
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆29Updated last year
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated last month
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 3 months ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 7 months ago
• nf-cmgg / structural
  A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…
  ☆26Updated 2 weeks ago
• WGLab / LongGF
  A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
  ☆21Updated 4 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆37Updated 8 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 6 months ago
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆13Updated 3 weeks ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆16Updated 6 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago