akikuno / DAJIN2Links
đŹ Genotyping tool for genome-edited samples using nanopore-targeted sequencing
â14Updated this week
Alternatives and similar repositories for DAJIN2
Users that are interested in DAJIN2 are comparing it to the libraries listed below
Sorting:
- Nextflow implementation of the GATK HaplotypeCaller pipelineâ13Updated 3 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.â26Updated 11 months ago
- a lexicographically-based GTF/GFF sorterâ35Updated 2 months ago
- Whole Exome/Whole Genome Sequencing alignment pipelineâ28Updated 9 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)â17Updated 2 weeks ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.â24Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA dataâ23Updated 9 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.â13Updated this week
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split âŚâ16Updated last year
- A command line tool to compute mapping statistics from a BAM fileâ24Updated 3 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific regionâ11Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.â19Updated 3 years ago
- ORF prediction using pythonâ11Updated 3 years ago
- â19Updated 2 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.â44Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.â15Updated last week
- Implementation of ToL genome assembly workflowsâ20Updated 2 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNAâ35Updated 4 months ago
- Tools to gather evidence for structural variation via breakpoint detection.â19Updated 2 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studiesâ18Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreadsâ15Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic readsâ26Updated 3 years ago
- Variant catalogue pipelineâ25Updated last month
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipelineâ12Updated last year
- Nextflow workflow for automatic repeat detection, classification and maskingâ13Updated 7 years ago
- Merge transcriptome assembliesâ31Updated 8 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS dataâ20Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fâŚâ31Updated 3 years ago
- Integrative analysis of complex structural variantsâ21Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence dataâ21Updated 4 years ago