akikuno / DAJIN2Links
🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing
☆14Updated 3 weeks ago
Alternatives and similar repositories for DAJIN2
Users that are interested in DAJIN2 are comparing it to the libraries listed below
Sorting:
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated last year
- Easy genomic regions for short-read variant calling☆33Updated this week
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- a lexicographically-based GTF/GFF sorter☆36Updated 3 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆12Updated last year
- ☆20Updated 3 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆18Updated 11 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆15Updated 7 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 10 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- R Bindings for htslib/bcf☆10Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆23Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Identification of structural variations☆12Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- structure detection program☆17Updated 8 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago