akikuno / DAJIN2Links
🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing
☆14Updated 2 weeks ago
Alternatives and similar repositories for DAJIN2
Users that are interested in DAJIN2 are comparing it to the libraries listed below
Sorting:
- ☆27Updated 9 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 4 months ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- Easy genomic regions for short-read variant calling☆45Updated 5 months ago
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- ☆16Updated last year
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆31Updated 7 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 5 years ago
- structure detection program☆18Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last month
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Updated last year
- R Bindings for htslib/bcf☆10Updated 2 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- Structural variant pipeline☆18Updated 5 years ago
- Structural variant (SV) analysis tools☆40Updated last year