whitead / minimalafLinks
Minimal AlphaFold
☆55Updated last year
Alternatives and similar repositories for minimalaf
Users that are interested in minimalaf are comparing it to the libraries listed below
Sorting:
- TMol☆47Updated last week
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆49Updated 3 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 11 months ago
- Structure prediction of alternative protein conformations☆80Updated 8 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- ML-guided enzyme engineering☆69Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 5 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆81Updated last month
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated 2 years ago
- Consolidated repository to perform RLXF☆35Updated last month
- ☆95Updated 2 weeks ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆52Updated 5 months ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- composite-objective protein design☆117Updated 2 weeks ago
- Protein Engineering via Exploration of an Energy Landscape☆84Updated this week
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆34Updated last year
- bioinformatics tools running on modal☆107Updated 2 weeks ago
- It's a package for evaluation of predicted poses, right?☆71Updated 2 weeks ago
- Potts model-based protein sequence design☆57Updated last week
- ProtMamba: a homology-aware but alignment-free protein state space model☆80Updated 5 months ago
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆77Updated 4 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- ☆37Updated last year
- JAX translation of boltz☆20Updated 3 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆50Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆88Updated 5 months ago
- ☆30Updated last year