whitead / minimalaf
Minimal AlphaFold
☆53Updated 8 months ago
Alternatives and similar repositories for minimalaf:
Users that are interested in minimalaf are comparing it to the libraries listed below
- ☆43Updated last month
- ML-guided enzyme engineering☆61Updated 2 weeks ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆82Updated last month
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated last month
- ProtMamba: a homology-aware but alignment-free protein state space model☆62Updated last month
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆95Updated this week
- ☆58Updated last month
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 4 months ago
- BARTSmiles, generative masked language model for molecular representations☆33Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆35Updated last week
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆51Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated last year
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆56Updated 6 months ago
- Molecular Out-Of-Distribution☆37Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆75Updated 2 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆53Updated 2 months ago
- ☆36Updated 6 months ago
- TMol☆31Updated this week
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- A benchmark for 3D biomolecular structure prediction models☆57Updated 4 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆41Updated 5 months ago
- Run OpenMM with forces provided by any Python program☆34Updated 4 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆89Updated 3 weeks ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆96Updated 9 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆51Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆93Updated 9 months ago
- It's a package for evaluation of predicted poses, right?☆52Updated this week
- Bayesian Optimization with Pretrained Protein Sequence Models☆54Updated 9 months ago
- ☆38Updated last week