VLeiteGroup / ELViMLinks
ELViM is a method for visualizing the energy landscapes of biomolecules simulations.
☆12Updated 4 months ago
Alternatives and similar repositories for ELViM
Users that are interested in ELViM are comparing it to the libraries listed below
Sorting:
- Software for the prediction of DEER and PRE data from conformational ensembles.☆12Updated 7 months ago
- Deep Boosted Molecular Dynamics☆13Updated last year
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆25Updated 3 months ago
- ☆19Updated 2 weeks ago
- ☆69Updated last year
- ☆19Updated 8 months ago
- Convert coarse-grained protein structure to all-atom model☆47Updated 6 months ago
- ☆14Updated last year
- ☆32Updated 2 years ago
- An efficient approach to RMSD-Based HDBSCAN Clustering of long Molecular Dynamics☆17Updated 3 years ago
- Generate intrinsically disordered peptide conformations via machine learning☆24Updated last year
- ☆34Updated last year
- Force Fields☆66Updated 11 months ago
- mdml: Deep Learning for Molecular Simulations☆48Updated 7 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆29Updated last week
- Adding hydrogens to molecular models☆53Updated last month
- ☆80Updated 2 months ago
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Updated 4 months ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated 7 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆112Updated 3 weeks ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last month
- ☆34Updated 2 years ago
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆26Updated last month
- TMol☆49Updated last week
- Tools to build coarse grained models and perform simulations with OpenMM☆25Updated 3 years ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆12Updated last year
- Free Parametrization for Small Molecules☆49Updated 2 months ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆14Updated 3 years ago
- ☆47Updated last month
- Integrating Molecular Simulation and Experimental Data☆25Updated 4 years ago