Peldom / papers_for_protein_design_using_DL

Related projects ⓘ

Alternatives and complementary repositories for papers_for_protein_design_using_DL

• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,034Updated 3 months ago
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,537Updated 5 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆623Updated 3 weeks ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,128Updated 9 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆609Updated 2 weeks ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆649Updated 3 months ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆831Updated last week
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆1,986Updated this week
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,097Updated 2 months ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆662Updated last year
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆524Updated last month
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆319Updated 4 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆354Updated this week
• AspirinCode / papers-for-molecular-design-using-DL
  List of Molecular and Material design using Generative AI and Deep Learning
  ☆679Updated this week
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆520Updated 11 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆595Updated 5 months ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆653Updated this week
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆492Updated 3 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆328Updated last year
• nrbennet / dl_binder_design
  ☆248Updated 3 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆265Updated 3 weeks ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆333Updated 5 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆466Updated last year
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆296Updated last week
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆245Updated last year
• generatebio / chroma
  A generative model for programmable protein design
  ☆694Updated 7 months ago
• lucidrains / alphafold3-pytorch
  Implementation of Alphafold 3 in Pytorch
  ☆1,240Updated this week
• RosettaCommons / RFdiffusion
  Code for running RFdiffusion
  ☆1,777Updated 2 months ago
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆758Updated last week
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆371Updated last month