Efficient manipulation of protein structures in Python
☆68Jun 16, 2026Updated 3 months ago
Alternatives and similar repositories for afpdb
Users that are interested in afpdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆195Jun 24, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆40Sep 17, 2024Updated 2 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- ☆13Aug 26, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official repository of GENzyme☆66Nov 29, 2024Updated last year
- Heuristic energy-based cyclic peptide design☆16Feb 21, 2025Updated last year
- protein structure generation with sparse all-atom denoising models☆62Jul 7, 2026Updated 2 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last month
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆35Aug 23, 2024Updated 2 years ago
- ☆102Jul 24, 2026Updated last month
- ☆74Feb 13, 2026Updated 7 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated last month
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- Compressing protein structures effectively with torsion angles☆196Sep 7, 2026Updated last week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆191Oct 7, 2025Updated 11 months ago
- ☆15Mar 28, 2025Updated last year
- AlphaFold-initiated replica exchange protein docking☆94Jun 5, 2025Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆330Jul 19, 2024Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆545Mar 22, 2026Updated 5 months ago
- Making Protein Design accessible to all via Google Colab!☆939Aug 28, 2026Updated 3 weeks ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆25Mar 6, 2025Updated last year
- ☆16Dec 10, 2024Updated last year
- ☆34Feb 5, 2025Updated last year
- Rifdock Library for Conformational Search☆179May 16, 2024Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆35Jul 16, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 5 months ago
- Directed evolution of proteins in sequence space with gradients☆97Oct 18, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆152Mar 12, 2026Updated 6 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- ☆15Jun 19, 2026Updated 3 months ago
- Pretrained METL models with minimal dependencies☆16Updated this week
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- ☆34Dec 6, 2025Updated 9 months ago