Efficient manipulation of protein structures in Python
☆67Sep 27, 2025Updated 6 months ago
Alternatives and similar repositories for afpdb
Users that are interested in afpdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- ☆13Apr 1, 2026Updated last week
- ☆40Sep 17, 2024Updated last year
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆24Mar 22, 2026Updated 2 weeks ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆32Aug 23, 2024Updated last year
- ☆74Feb 13, 2026Updated last month
- ☆96Oct 14, 2025Updated 5 months ago
- ☆27Aug 8, 2025Updated 8 months ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Mar 18, 2026Updated 3 weeks ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated 2 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆181Oct 7, 2025Updated 6 months ago
- AlphaFold-initiated replica exchange protein docking☆91Jun 5, 2025Updated 10 months ago
- ☆16Mar 28, 2025Updated last year
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆901Updated this week
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆520Mar 22, 2026Updated 2 weeks ago
- ☆16Dec 10, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆82Sep 11, 2025Updated 6 months ago
- ☆33Feb 5, 2025Updated last year
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 5 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- Code for running BinderFlow☆64Nov 21, 2025Updated 4 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆125Aug 3, 2025Updated 8 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Rifdock Library for Conformational Search☆171May 16, 2024Updated last year
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆47Aug 5, 2025Updated 8 months ago
- PPI version of Pythia☆32Sep 12, 2025Updated 6 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 3 weeks ago
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- ☆106Mar 31, 2026Updated last week