Sandbox for Deep-Learning based Computational Protein Design
☆121Dec 11, 2025Updated 7 months ago
Alternatives and similar repositories for TRILL
Users that are interested in TRILL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆15Jun 25, 2026Updated 3 weeks ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆279Feb 14, 2024Updated 2 years ago
- ☆259Jul 31, 2024Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆100Oct 5, 2023Updated 2 years ago
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated 10 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 10 months ago
- Making Protein Design accessible to all via Google Colab!☆924Apr 6, 2026Updated 3 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 3 months ago
- ☆217Sep 24, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆236Aug 27, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Natural Language-Based Synthetic Data Generation for Cluster Analysis.☆18Feb 23, 2025Updated last year
- ☆44Aug 29, 2025Updated 10 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Dec 27, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆194Jun 30, 2026Updated 3 weeks ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- ☆114Updated this week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Listing of papers about machine learning for proteins.☆1,712May 31, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆83Updated this week
- A generative model for programmable protein design☆824Apr 11, 2024Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆91Dec 4, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆275Apr 27, 2025Updated last year
- Template-based protein design with Raygun☆84Apr 12, 2026Updated 3 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 2 months ago
- Detection of remote homology by comparison of protein language model representations☆64Dec 16, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- ☆135May 19, 2026Updated 2 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆86Sep 11, 2025Updated 10 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- ☆33Dec 6, 2025Updated 7 months ago