martinez-zacharya / TRILLLinks
Sandbox for Deep-Learning based Computational Protein Design
☆112Updated last month
Alternatives and similar repositories for TRILL
Users that are interested in TRILL are comparing it to the libraries listed below
Sorting:
- Improved antibody structure-based design using inverse folding☆128Updated 2 months ago
- Directed evolution of proteins in sequence space with gradients☆87Updated last year
- Plugin for folding sequences directly in PyMOL☆101Updated last month
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated last week
- Protein folding in Pymol☆109Updated 6 months ago
- ☆186Updated 2 weeks ago
- Code for ColabDock paper☆142Updated 3 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆58Updated 4 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆143Updated last week
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 3 months ago
- Making Protein Modeling Accessible to All Biologists☆115Updated this week
- PLM based active learning model for protein engineering☆82Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆131Updated 3 months ago
- Predict the structure of immune receptor proteins☆148Updated 6 months ago
- Protein-ligand structure prediction☆225Updated last week
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆116Updated 4 months ago
- ☆110Updated 2 years ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆155Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆60Updated 5 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆103Updated 2 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 8 months ago
- ☆62Updated 9 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆90Updated 2 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆123Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- Convenience Python APIs for antibody numbering using ANARCI☆102Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆115Updated last year
- ☆112Updated last year