martinez-zacharya / TRILLView external linksLinks
Sandbox for Deep-Learning based Computational Protein Design
☆120Dec 11, 2025Updated 2 months ago
Alternatives and similar repositories for TRILL
Users that are interested in TRILL are comparing it to the libraries listed below
Sorting:
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Dec 1, 2025Updated 2 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 9 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆326Oct 28, 2024Updated last year
- ☆212Sep 24, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆186Feb 10, 2026Updated last week
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆273Feb 14, 2024Updated 2 years ago
- ☆255Jul 31, 2024Updated last year
- Fast protein domain structure embedding+search tool☆27Sep 21, 2025Updated 4 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆98Oct 5, 2023Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆163Jul 30, 2025Updated 6 months ago
- Diffusion-based all-atom protein generative model.☆230Aug 27, 2025Updated 5 months ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆37Jan 21, 2026Updated 3 weeks ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last week
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆73Jan 27, 2026Updated 3 weeks ago
- Making Protein Design accessible to all via Google Colab!☆883Dec 8, 2025Updated 2 months ago
- A generative model for programmable protein design☆796Apr 11, 2024Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 3 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Dec 2, 2025Updated 2 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Jan 17, 2023Updated 3 years ago
- Natural Language-Based Synthetic Data Generation for Cluster Analysis.☆18Feb 23, 2025Updated 11 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 8 months ago
- A bunch of shell utilities for dealing the silent files☆77Jan 5, 2026Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆265Apr 27, 2025Updated 9 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆225Aug 7, 2025Updated 6 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- AlphaLink: Integrating crosslinking MS data into OpenFold☆72Dec 14, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆312Jul 19, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61May 21, 2025Updated 8 months ago
- Listing of papers about machine learning for proteins.☆1,689May 31, 2024Updated last year
- An all-atom protein structure dataset for machine learning.☆359Mar 16, 2024Updated last year
- Protein Engineering via Exploration of an Energy Landscape☆105Feb 4, 2026Updated last week
- ☆120Feb 3, 2026Updated 2 weeks ago
- Protein-ligand structure prediction☆238Jul 31, 2025Updated 6 months ago