Alternatives and similar repositories for pet-pilot-2023

Users that are interested in pet-pilot-2023 are comparing it to the libraries listed below

• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated last month
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆71Updated last week
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆48Updated last week
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆60Updated 5 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• AbSciBio / igdesign
  ☆43Updated 7 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 4 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated 9 months ago
• Exscientia / abodybuilder3
  ☆63Updated 9 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆59Updated 6 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 4 months ago
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆35Updated 4 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆38Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated last month
• softnanolab / bagel
  Protein Engineering via Exploration of an Energy Landscape
  ☆75Updated last week
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆44Updated 4 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆51Updated 4 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆29Updated 3 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆70Updated 2 weeks ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆65Updated this week
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆76Updated 5 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated 11 months ago