Results and data from the pilot round of the Protein Engineering Tournament
☆30Mar 25, 2025Updated last year
Alternatives and similar repositories for pet-pilot-2023
Users that are interested in pet-pilot-2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated 9 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 8 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆48Jan 1, 2026Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆31Dec 12, 2024Updated last year
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Apr 30, 2026Updated last month
- Fitness landscape exploration sandbox for biological sequence design.☆173Feb 16, 2023Updated 3 years ago
- ☆15Mar 28, 2025Updated last year
- ☆23Nov 6, 2024Updated last year
- ☆24May 19, 2025Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆60Dec 16, 2025Updated 5 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆162Updated this week
- ☆10Oct 31, 2025Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆44Mar 30, 2026Updated 2 months ago
- ☆28Aug 8, 2025Updated 9 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆80Feb 24, 2025Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆43Jun 11, 2025Updated 11 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆91Apr 10, 2026Updated last month
- ☆21Oct 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆35May 11, 2026Updated 2 weeks ago
- ☆33Oct 14, 2024Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 9 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 3 months ago
- ☆258Jul 31, 2024Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆100Oct 5, 2023Updated 2 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated 10 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆29May 24, 2024Updated 2 years ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- ☆14Jan 8, 2025Updated last year
- ☆52Apr 22, 2026Updated last month
- Benchmark for Biophysical Sequence Optimization Algorithms☆22Apr 15, 2026Updated last month
- Making Protein Language Modeling Accessible to All Biologists☆164May 21, 2026Updated last week
- Aligning protein generative models with experimental fitness☆121Mar 12, 2026Updated 2 months ago