Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
☆104May 25, 2025Updated 9 months ago
Alternatives and similar repositories for PepFlowww
Users that are interested in PepFlowww are comparing it to the libraries listed below
Sorting:
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆109Apr 16, 2025Updated 10 months ago
- This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)☆89May 17, 2025Updated 9 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆84Dec 7, 2025Updated 2 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆37Dec 7, 2025Updated 2 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆354Jun 29, 2023Updated 2 years ago
- [ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension☆17May 5, 2025Updated 10 months ago
- ☆15May 29, 2024Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated 2 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- ☆117Jan 3, 2026Updated 2 months ago
- ☆32Mar 18, 2025Updated 11 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆275Dec 10, 2024Updated last year
- ☆216Mar 2, 2024Updated 2 years ago
- ☆37Aug 28, 2023Updated 2 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- ☆57Jul 22, 2025Updated 7 months ago
- Public RFDiffusionAA repo☆464Jul 9, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- ☆212Sep 24, 2024Updated last year
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆22Jul 18, 2025Updated 7 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Fragment binding prediction with ColabFold☆42Nov 9, 2025Updated 3 months ago
- Energy-guided binder design pipeline built on BindCraft☆16Jun 6, 2025Updated 8 months ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Template-based protein design with Raygun☆77Feb 7, 2026Updated 3 weeks ago