Alternatives and similar repositories for PepFlowww

Users that are interested in PepFlowww are comparing it to the libraries listed below

• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆95Updated 7 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆120Updated 8 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆99Updated 2 years ago
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆73Updated 2 years ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• wengong-jin / DSMBind
  ☆95Updated last year
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆88Updated last year
• kxz18 / UniMoMo
  Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)
  ☆63Updated last month
• bytedance / HMR
  Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023
  ☆24Updated 2 years ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆69Updated last year
• wengong-jin / abdockgen
  ☆107Updated 2 years ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆110Updated 2 years ago
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆134Updated 4 months ago
• JocelynSong / SurfPro
  ☆33Updated 7 months ago
• GenSI-THUAIR / MolCRAFT
  Official repository for MolCRAFT series
  ☆131Updated 2 weeks ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆79Updated last year
• THUNLP-MT / GET
  This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).
  ☆38Updated 4 months ago
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆132Updated 2 months ago
• pengxingang / MolDiff
  MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation
  ☆75Updated last year
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆66Updated 8 months ago
• HannesStark / FlowSite
  Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …
  ☆103Updated last year
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆107Updated 3 weeks ago
• zhengkangjie / ESM-AA
  ☆76Updated 9 months ago
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆118Updated 8 months ago
• levinthal / Pallatom
  ☆126Updated 5 months ago
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆90Updated last year
• alexechu / protpardelle
  ☆65Updated 2 years ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year