Alternatives and similar repositories for columba

Users that are interested in columba are comparing it to the libraries listed below

• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated 9 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated last year
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• chfi / waragraph
  ☆29Updated last year
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated 2 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆20Updated 6 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆27Updated 7 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆11Updated 7 years ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆12Updated 8 months ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated 2 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 6 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 9 months ago
• chfi / gfainject
  ☆17Updated 2 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• iqbal-lab-org / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆20Updated last year
• mohsenzakeri / Movi
  Fast, Cache-Efficient, and Scalable Queries on Pangenomes
  ☆34Updated last month
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆23Updated 3 weeks ago
• natir / nuc2bit
  ☆14Updated 5 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• langmead-lab / vargas
  ☆24Updated 3 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 8 months ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆17Updated 2 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated this week