Alternatives and similar repositories for jbrowse-registry

Users that are interested in jbrowse-registry are comparing it to the libraries listed below

• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 7 years ago
• ihh / abrowse
  Multiple sequence alignment browser
  ☆11Updated 2 years ago
• noefp / easy_gdb
  ☆13Updated this week
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• elsiklab / sashimiplot
  A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
  ☆14Updated 4 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 3 years ago
• bhofmei / jbplugin-methylation
  JBrowse plugin for methylation related things
  ☆16Updated 7 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆26Updated 2 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 5 months ago
• gregorykucherov / mreps
  mreps: software for tandem repeat identification in DNA
  ☆15Updated 5 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated this week
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• gengit / FRAMA
  FRAMA: From RNA-seq data to annotated mRNA assemblies
  ☆12Updated 7 years ago
• orangeSi / bam2msa
  convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
  ☆13Updated last year
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆23Updated 2 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• rioualen / gene-regulation
  Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.
  ☆11Updated 8 years ago
• gaitat / GenomeUPlot
  The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
  ☆32Updated 2 years ago
• nickloman / massive-nanopore-silliness
  Very very long reads, indeed
  ☆13Updated 8 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last week
• s-andrews / redotable
  A dotplot application for DNA/RNA sequence
  ☆11Updated 2 years ago