Alternatives and similar repositories for BioMart

Users that are interested in BioMart are comparing it to the libraries listed below

• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• galaxy-genome-annotation / docker-jbrowse
  Docker image of JBrowse Genome Browser
  ☆15Updated 4 years ago
• IrinaVKuznetsova / OmicsVolcano
  ☆10Updated last year
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 8 months ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated last week
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 7 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• ewels / Labrador
  A web based tool to manage and automate the processing of publicly available datasets.
  ☆39Updated 4 years ago
• waldronlab / HMP16SData
  16S rRNA Sequencing Data from the Human Microbiome Project
  ☆10Updated 2 months ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 4 months ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated last year
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 6 months ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 4 months ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 2 months ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 2 months ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 8 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 7 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 5 months ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 3 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• Bioconductor / ExperimentHub
  Client to access ExperimentHub resources
  ☆11Updated 2 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 6 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago