IntelLabs / Trans-Omics-Acceleration-Library
☆16Updated 10 months ago
Alternatives and similar repositories for Trans-Omics-Acceleration-Library:
Users that are interested in Trans-Omics-Acceleration-Library are comparing it to the libraries listed below
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Implementation of a Backpack Quotient Filter☆11Updated 8 months ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆48Updated 2 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆33Updated 6 months ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated last year
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated last month
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆47Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 10 months ago
- A repository for generating strobemers and evalaution☆77Updated 11 months ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated last month
- Self-contained, multi-threaded fasta/q parser☆43Updated 6 months ago
- Bidirectional WFA (Paper)☆46Updated 10 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 8 years ago
- Fast and cache-efficient full-text pangenome index☆27Updated last week
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆73Updated 9 months ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆16Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 10 months ago
- online notebooks for a review of genome sketching☆61Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago