☆17Jul 25, 2025Updated 11 months ago
Alternatives and similar repositories for Trans-Omics-Acceleration-Library
Users that are interested in Trans-Omics-Acceleration-Library are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- Intel lab's open sourced data science framework for accelerating digital biology☆54Apr 9, 2026Updated 3 months ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Oct 21, 2024Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Updated this week
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Fast Approximate Pattern Matching using Search Schemes☆17Jul 11, 2026Updated last week
- S-Store Transactional Streaming Data Management System☆22Jul 25, 2020Updated 5 years ago
- learned cardinalities for databases☆16Apr 12, 2023Updated 3 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- ☆19Jun 23, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- ☆14May 12, 2023Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆58Jun 4, 2024Updated 2 years ago
- Accelerated kernel library for genomics☆112Jul 7, 2025Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- ☆20Nov 14, 2022Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Tutorial about noisy labels for SIBGRAPI 2020☆11Nov 6, 2020Updated 5 years ago
- nosqlapi is a library for building standard NOSQL python libraries.☆12Apr 5, 2022Updated 4 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 9 months ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆41Jul 16, 2026Updated last week
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Updated this week
- Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits☆26Dec 26, 2024Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 6 years ago
- ☆17Nov 23, 2023Updated 2 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- ☆25Feb 18, 2021Updated 5 years ago