☆16Jul 27, 2026Updated 3 months ago
Alternatives and similar repositories for Trans-Omics-Acceleration-Library
Users that are interested in Trans-Omics-Acceleration-Library are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 5 years ago
- Intel lab's open sourced data science framework for accelerating digital biology☆56Oct 23, 2026Updated last week
- A benchmark suite to study the performance characteristics of genomics applications☆33Oct 21, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Profile RNA-seq data using published TB gene signatures☆13Dec 15, 2025Updated 10 months ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- ☆14Sep 24, 2026Updated last month
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- ☆11Sep 25, 2021Updated 5 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Draw Circos in Python☆32Sep 19, 2022Updated 4 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆59Jun 4, 2024Updated 2 years ago
- ☆14May 12, 2023Updated 3 years ago
- updated version of nwalign with Python 3.X compatibility☆10May 17, 2022Updated 4 years ago
- ☆20Nov 14, 2022Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆16Mar 4, 2019Updated 7 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Tutorial about noisy labels for SIBGRAPI 2020☆11Nov 6, 2020Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆26Sep 1, 2020Updated 6 years ago
- nosqlapi is a library for building standard NOSQL python libraries.☆12Apr 5, 2022Updated 4 years ago
- Started as a Team Project for CS690D at UMass Amherst, now turning into pytorch implementation of hyperbolic neural networks using Poinca…☆12Dec 8, 2022Updated 3 years ago
- A collection of TensorFlow tutorials to analyze genomics datasets☆10Feb 2, 2018Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Accelerated kernel library for genomics☆113Oct 12, 2026Updated 3 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆41Oct 6, 2026Updated 3 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 6 years ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Oct 15, 2026Updated 2 weeks ago
- Tools to process biological sequences and annotations to modern file formats.☆12Jul 31, 2022Updated 4 years ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago