sjackman / docker-bio
Docker images of bioinformatics software
☆21Updated 7 years ago
Alternatives and similar repositories for docker-bio:
Users that are interested in docker-bio are comparing it to the libraries listed below
- reference free variant assembly☆33Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- ☆19Updated 8 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- A configurable de novo assembly pipeline☆28Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 4 months ago
- ☆14Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- blast, shmlast☆22Updated 4 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- ☆13Updated 7 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Genome assembly/prediction/annotation pipeline for the Linux command line☆8Updated 6 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago