rcedgar / palmscan
☆25Updated last year
Alternatives and similar repositories for palmscan:
Users that are interested in palmscan are comparing it to the libraries listed below
- Database of virus RdRP barcode sequences☆15Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Convert genbank files to a swath of other formats☆16Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆33Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated last month
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated 9 months ago
- ☆29Updated 2 weeks ago
- Bacterial GWAS analysis☆37Updated this week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆45Updated last month
- ☆17Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆23Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 2 months ago
- Gene-flank analysis tool☆27Updated 2 months ago
- ☆31Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆43Updated this week
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 8 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 7 months ago