rcedgar / palmscanLinks
☆26Updated last month
Alternatives and similar repositories for palmscan
Users that are interested in palmscan are comparing it to the libraries listed below
Sorting:
- Database of virus RdRP barcode sequences☆16Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆32Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 7 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Unified Human Gut Virome Catalog☆32Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- strain-level analysis tools☆39Updated 9 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Discover and annotate the virome☆45Updated 3 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 5 months ago
- ☆32Updated 5 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆37Updated 4 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year
- ☆50Updated 3 months ago
- ☆16Updated 2 weeks ago
- UFCG: Universal Fungal Core Genes☆34Updated last week