Alternatives and similar repositories for palmscan

Users that are interested in palmscan are comparing it to the libraries listed below

• rcedgar / palmdb
  Database of virus RdRP barcode sequences
  ☆16Updated 11 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆38Updated last year
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆38Updated 3 weeks ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 6 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 4 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆25Updated 2 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last month
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆47Updated 6 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆32Updated 11 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆36Updated 3 months ago
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆22Updated 3 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆32Updated 4 months ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆33Updated 4 months ago
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆26Updated last week
• cmmr / virmap
  ☆26Updated 4 years ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆48Updated last week
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated last week
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 10 months ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 4 years ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆95Updated 9 months ago
• BackofenLab / CRISPRidentify
  ☆30Updated 6 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆36Updated last year
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆39Updated last week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆38Updated 8 months ago
• Stephane-S / Simplot_PlusPlus
  ☆35Updated last year
• nextgenusfs / funannotate2
  Eukaryotic genome annotation software.
  ☆18Updated this week