rcedgar / palmscanLinks
☆26Updated 6 months ago
Alternatives and similar repositories for palmscan
Users that are interested in palmscan are comparing it to the libraries listed below
Sorting:
- Database of virus RdRP barcode sequences☆16Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Convert genbank files to a swath of other formats☆24Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated this week
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- ☆52Updated 8 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Find Unique genomic Regions☆32Updated last week
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 2 weeks ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Updated 5 months ago
- PHANOTATE: a gene caller for phages.☆80Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆45Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- ☆17Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month