☆26Oct 9, 2020Updated 6 years ago
Alternatives and similar repositories for multiomic-cooccurrences
Users that are interested in multiomic-cooccurrences are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Neural networks for microbe-metabolite interaction analysis☆132Nov 4, 2022Updated 4 years ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- Categorical Variational Autoencoders☆25Feb 4, 2022Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆20Aug 4, 2020Updated 6 years ago
- The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R…☆16Sep 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆86Oct 16, 2024Updated 2 years ago
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆77Dec 17, 2024Updated last year
- ☆21Jul 22, 2024Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆29Updated this week
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆27Aug 20, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 3 years ago
- ☆20Jul 12, 2023Updated 3 years ago
- Code depository for papers☆27Sep 16, 2026Updated last month
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 6 months ago
- ☆19Nov 16, 2018Updated 7 years ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 7 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 4 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- ☆10Oct 31, 2021Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- ☆15Jul 4, 2023Updated 3 years ago
- ☆12Apr 2, 2021Updated 5 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated 3 weeks ago
- microbiome R package☆320Oct 24, 2026Updated last week
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 8 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Transform files to the microtable object with microeco package☆29May 29, 2026Updated 5 months ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 7 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago