knightlab-analyses / multiomic-cooccurrencesLinks
☆25Updated 5 years ago
Alternatives and similar repositories for multiomic-cooccurrences
Users that are interested in multiomic-cooccurrences are comparing it to the libraries listed below
Sorting:
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 8 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- exploratory and interactive microbiome analyses based on heatmaps☆27Updated 11 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ☆38Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- Neural networks for microbe-metabolite interaction analysis☆126Updated 3 years ago
- ☆77Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- ☆33Updated 5 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆27Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- ☆17Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Updated last month
- ☆29Updated last year
- compositional data analysis toolbox☆60Updated 3 years ago
- metabolic heatmap☆22Updated 6 years ago
- Time-Course Multi-Omics data integration☆26Updated last year
- Client-side REST access to KEGG☆14Updated last month
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago