☆26Oct 9, 2020Updated 5 years ago
Alternatives and similar repositories for multiomic-cooccurrences
Users that are interested in multiomic-cooccurrences are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- Categorical Variational Autoencoders☆24Feb 4, 2022Updated 4 years ago
- The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R…☆17Jun 23, 2026Updated last month
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- ☆21Jul 22, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last month
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆29Jul 13, 2026Updated last week
- ☆19Nov 16, 2018Updated 7 years ago
- ☆20Jul 12, 2023Updated 3 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 2 years ago
- ☆81Oct 16, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Transcriptomics-Proteomics Integration Pipeline☆21Apr 11, 2024Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆75Dec 17, 2024Updated last year
- ☆13Feb 5, 2022Updated 4 years ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆18Jan 8, 2016Updated 10 years ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 3 years ago
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆32Mar 27, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆31May 7, 2026Updated 2 months ago
- ☆15Jul 4, 2023Updated 3 years ago
- Similarity Network Fusion☆43Aug 12, 2015Updated 10 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Wormbase Build Pipeline☆22Jan 7, 2026Updated 6 months ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Pan-cancer mycobiome atlas☆33Oct 7, 2022Updated 3 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 6 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago