knightlab-analyses / multiomic-cooccurrencesLinks
☆25Updated 5 years ago
Alternatives and similar repositories for multiomic-cooccurrences
Users that are interested in multiomic-cooccurrences are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Web-based software for visualization of molecular maps in 2D and 3D☆27Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- ☆10Updated 6 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 7 months ago
- Time-Course Multi-Omics data integration☆26Updated last year
- ☆76Updated last year
- ☆29Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆29Updated last year
- ☆33Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 weeks ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- exploratory and interactive microbiome analyses based on heatmaps☆27Updated 9 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- Neural networks for microbe-metabolite interaction analysis☆125Updated 3 years ago
- ☆34Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆11Updated 5 years ago
- metabolic heatmap☆21Updated 6 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- pathway based data integration and visualization☆42Updated 7 months ago
- ☆17Updated last year
- ☆37Updated last year
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆22Updated 6 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago