knightlab-analyses / multiomic-cooccurrencesLinks
☆26Updated 4 years ago
Alternatives and similar repositories for multiomic-cooccurrences
Users that are interested in multiomic-cooccurrences are comparing it to the libraries listed below
Sorting:
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- MicrobeDirectory 2.0☆22Updated 4 years ago
- ☆13Updated last year
- ☆11Updated 6 years ago
- ☆37Updated last year
- exploratory and interactive microbiome analyses based on heatmaps☆27Updated 5 months ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- compositional data analysis toolbox☆59Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- ☆73Updated 9 months ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Automated synthetic microbial Community Design☆14Updated 4 years ago
- ☆31Updated 4 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 3 months ago
- ☆29Updated last year
- ☆15Updated 7 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated last year