code repo for mobileOG-db
☆51Jul 30, 2026Updated 2 months ago
Alternatives and similar repositories for mobileOG-db
Users that are interested in mobileOG-db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆75Aug 28, 2026Updated last month
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- ☆39Sep 14, 2026Updated 3 weeks ago
- ☆38Apr 15, 2024Updated 2 years ago
- ☆119Sep 25, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 2 years ago
- ☆27Apr 20, 2023Updated 3 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆52Apr 20, 2023Updated 3 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆105Jul 11, 2023Updated 3 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 6 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Sep 1, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆336Mar 29, 2026Updated 6 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Sep 4, 2017Updated 9 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆434Updated this week
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago
- Systematic search of all known anti-phage systems.☆187Sep 1, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆425Sep 10, 2026Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repo for Proksee Cmd Line Tools☆30Feb 22, 2023Updated 3 years ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆60Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆623Updated this week
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆35Jun 17, 2024Updated 2 years ago
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- ☆15Apr 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆154Sep 29, 2026Updated last week
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆60Apr 30, 2026Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Sep 17, 2025Updated last year
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- ☆64Feb 27, 2024Updated 2 years ago
- DAS Tool☆176May 2, 2024Updated 2 years ago