code repo for mobileOG-db
☆48Nov 6, 2025Updated 6 months ago
Alternatives and similar repositories for mobileOG-db
Users that are interested in mobileOG-db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ☆37Nov 5, 2025Updated 6 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆126Oct 30, 2023Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- ☆25Apr 20, 2023Updated 3 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- ☆13Sep 4, 2017Updated 8 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- ☆99May 11, 2026Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆416Updated this week
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- ARGpore2☆13Sep 12, 2024Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆52May 8, 2026Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆312Mar 29, 2026Updated last month
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆367May 10, 2026Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆109Dec 5, 2025Updated 5 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated last month
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆60Dec 18, 2025Updated 5 months ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 months ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- Repo for Proksee Cmd Line Tools☆29Feb 22, 2023Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆598May 8, 2026Updated 2 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆84Sep 8, 2025Updated 8 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Apr 10, 2026Updated last month
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- ☆16Jan 12, 2026Updated 4 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆290Nov 28, 2024Updated last year
- Run_dbcan V5☆58May 15, 2026Updated last week
- fast phage annotation program☆210Apr 21, 2026Updated last month