clb21565 / mobileOG-dbLinks
code repo for mobileOG-db
☆46Updated 3 months ago
Alternatives and similar repositories for mobileOG-db
Users that are interested in mobileOG-db are comparing it to the libraries listed below
Sorting:
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- ☆56Updated last week
- ☆63Updated last year
- ☆53Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated last week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- ☆20Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Updated 9 months ago
- ☆22Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆83Updated 9 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆41Updated last month
- ☆32Updated last year
- ☆66Updated last year
- ☆35Updated 3 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 5 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago