Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
☆30Feb 3, 2020Updated 6 years ago
Alternatives and similar repositories for q2ONT
Users that are interested in q2ONT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆118Nov 20, 2023Updated 2 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆27Nov 16, 2023Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Jun 30, 2026Updated 4 months ago
- ☆36Aug 7, 2026Updated 2 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- Ready-made Taxonomic Weights Repository☆25Mar 31, 2022Updated 4 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A Python package for microbiome sequencing analysis with QIIME 2☆46Jan 28, 2024Updated 2 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dual barcode and primer demultiplexing for MinION sequenced reads☆42Jan 19, 2023Updated 3 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 7 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- ☆51Jan 23, 2026Updated 9 months ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 6 years ago
- WikiPathways Database☆19Updated this week
- Beautify the phylogenetic tree using one Excel sheet only☆18Mar 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 6 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Ordination lectures for Ecological Methods in Oulu☆22Aug 1, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Toolbox for comparative genomics of MAGs☆93Oct 22, 2026Updated last week
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated last month
- Implementation of CoNet in R☆16Oct 16, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆20Feb 3, 2023Updated 3 years ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆69Oct 3, 2026Updated 3 weeks ago
- Unsupervised Machine Learning project for evaluating 2017-18 NBA player similarity☆13Sep 25, 2019Updated 7 years ago
- Basic Sequence Taxonomy Annotator☆46May 14, 2024Updated 2 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- Maximum Likelihood Amplicon Pipeline☆22Aug 31, 2026Updated 2 months ago