MHH-RCUG / WochenendeLinks
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
☆37Updated 3 years ago
Alternatives and similar repositories for Wochenende
Users that are interested in Wochenende are comparing it to the libraries listed below
Sorting:
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 3 weeks ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Find Unique genomic Regions☆32Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 10 months ago
- Transfer coordinates across genomes☆23Updated 6 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- A tool for simulating random mutations in any genome☆43Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated this week
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- GC Skew Test for Bacterial Genomes☆30Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago