Robust Aitchison PCA from sparse count data
☆37Aug 17, 2022Updated 4 years ago
Alternatives and similar repositories for DEICODE
Users that are interested in DEICODE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 2 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Sep 9, 2026Updated last month
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆16Jun 2, 2021Updated 5 years ago
- BiomeNED main code☆12Jul 25, 2019Updated 7 years ago
- An R package to visualize high-throughput sequencing data.☆13Nov 18, 2019Updated 6 years ago
- Integral analysis of diversity based on Hill numbers☆12Jun 18, 2026Updated 3 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated 3 weeks ago
- ☆20Aug 10, 2022Updated 4 years ago
- ☆21Apr 25, 2025Updated last year
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 8 months ago
- REference Sequence annotation and CuRatIon Pipeline☆103Sep 29, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Jul 21, 2026Updated 2 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 4 months ago
- Automated taxonomy decoration onto a tree☆19Jul 16, 2026Updated 2 months ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 6 years ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 5 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated 2 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 10 months ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 6 months ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Categorical Variational Autoencoders☆25Feb 4, 2022Updated 4 years ago
- ☆16Apr 10, 2023Updated 3 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 6 years ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 8 months ago
- ☆11Sep 16, 2020Updated 6 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated last year
- ☆19Dec 16, 2024Updated last year