chanzuckerberg / idseq-workflows
Portable WDL workflows for IDseq production pipelines
☆31Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for idseq-workflows
- A reference viral database (RVDB)☆26Updated 5 years ago
- Mapped QC analysis program☆42Updated 6 years ago
- Long read to rMATS☆31Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆16Updated last year
- An R Package for Multiplex PCR Primer Design and Analysis☆24Updated 10 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- ☆51Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆25Updated 4 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- ☆18Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Adapters for trimming☆30Updated 5 years ago