NBISweden / nbis-metaLinks
A snakemake workflow for metagenomic projects
☆14Updated 2 years ago
Alternatives and similar repositories for nbis-meta
Users that are interested in nbis-meta are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A Shiny app for taxonomic abundance visualization☆7Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last week
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- ☆28Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- ☆22Updated 5 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 5 months ago
- ☆22Updated 4 months ago