A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
☆33Nov 5, 2025Updated 3 months ago
Alternatives and similar repositories for MetaBGC
Users that are interested in MetaBGC are comparing it to the libraries listed below
Sorting:
- ☆32Jan 27, 2026Updated last month
- gutSMASH☆57Oct 3, 2025Updated 4 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated 2 years ago
- BGC Detection and Classification Using Deep Learning☆156Nov 11, 2023Updated 2 years ago
- Neural networks for microbe-metabolite interaction analysis☆129Nov 4, 2022Updated 3 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- ☆20Mar 29, 2022Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆96Aug 11, 2025Updated 6 months ago
- GEne Cluster prediction with COnditional random fields.☆80Jan 24, 2026Updated last month
- ☆18Nov 19, 2022Updated 3 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- antiSMASH☆244Nov 20, 2025Updated 3 months ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Updated this week
- Curated Metagenomic Data of the Human Microbiome☆150Jan 21, 2026Updated last month
- ☆10Feb 21, 2020Updated 6 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Sep 28, 2022Updated 3 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- ☆14Dec 27, 2022Updated 3 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Sep 15, 2025Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- A predictor of enzyme optimal temperature☆13Mar 13, 2025Updated 11 months ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- ☆33Oct 27, 2020Updated 5 years ago
- Python package to study microbial communities using metabolic modeling.☆120Jan 26, 2026Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated 11 months ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Aug 19, 2022Updated 3 years ago