benedictpaten / sonLibLinks
Small general purpose library for C and Python with focus on bioinformatics.
☆31Updated 3 years ago
Alternatives and similar repositories for sonLib
Users that are interested in sonLib are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- ☆28Updated 6 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- ☆35Updated 5 years ago
- Find Unique genomic Regions☆30Updated last week
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆14Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago