benedictpaten / sonLib
Small general purpose library for C and Python with focus on bioinformatics.
☆29Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for sonLib
- ☆28Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 7 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- GBWT-based handle graph☆30Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Find Unique genomic Regions☆29Updated this week
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- ☆29Updated last year
- ☆32Updated last year
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- convert PAF format to CHAIN format☆26Updated 6 months ago
- 1-code framework: docs, C-library, and tools☆14Updated last month
- ✏️ Genome assembly polishing & SNV detection☆64Updated this week