benedictpaten / sonLibLinks
Small general purpose library for C and Python with focus on bioinformatics.
☆31Updated 2 years ago
Alternatives and similar repositories for sonLib
Users that are interested in sonLib are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆31Updated last year
- ☆28Updated 4 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆32Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- ☆34Updated 5 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 9 months ago
- Hitting associations with k-mers☆45Updated 3 years ago