dpastling / plethoraLinks
Copy number estimation of highly duplicated sequences
☆10Updated 7 years ago
Alternatives and similar repositories for plethora
Users that are interested in plethora are comparing it to the libraries listed below
Sorting:
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Hemang Parikh☆11Updated 9 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆12Updated last month
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Benchmark structural variant calls against a reference set☆17Updated 7 months ago
- Variant call adjudication☆16Updated 11 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Assemble the Genome in a Bottle sequencing data☆10Updated 7 years ago