dpastling / plethoraLinks
Copy number estimation of highly duplicated sequences
☆10Updated 8 years ago
Alternatives and similar repositories for plethora
Users that are interested in plethora are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Hemang Parikh☆11Updated 9 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- reference free variant assembly☆34Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Benchmark structural variant calls against a reference set☆17Updated 2 weeks ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 4 months ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- ☆22Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- Non-parametric structural variant genotyper☆15Updated 4 years ago
- Variant call adjudication☆16Updated last year