xflouris / newick-toolsLinks
Visualize and perform a multitude of operations on newick files
☆16Updated 3 years ago
Alternatives and similar repositories for newick-tools
Users that are interested in newick-tools are comparing it to the libraries listed below
Sorting:
- simple and not slow ORF caller☆21Updated 7 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last week
- Merge transcriptome assemblies☆31Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- Code and files used in teaching and training courses.☆31Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- GC Skew Test for Bacterial Genomes☆29Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 3 weeks ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago