xflouris / newick-tools
Visualize and perform a multitude of operations on newick files
☆16Updated 3 years ago
Alternatives and similar repositories for newick-tools
Users that are interested in newick-tools are comparing it to the libraries listed below
Sorting:
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 6 months ago
- ☆17Updated this week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- ☆19Updated 11 months ago
- Python version of PHLAWD☆21Updated 6 months ago
- ☆27Updated last year
- Infer the age of ancestral nodes in a tree sequence.☆21Updated last month
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 3 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆43Updated last year
- R We There Yet?☆30Updated last month
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 10 months ago
- Tools for analyzing trees☆14Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- ☆20Updated 7 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ☆26Updated 6 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated 2 years ago